Sustainability and transparency in computational cognitive neuroscience

In this talk, I will discuss open science practices that aim to foster sustainability and transparency in computational cognitive neuroscience. First, I will review recent community efforts that aim to ease data sharing and analytical reproducibility, such as the reports of the OHBM Committees on Best Practice in Data Analysis and Sharing (COBIDAS) and the Brain Imaging Data Structures (BIDS). Second, I will discuss neuroimaging data sharing strategies in the light of ethical and legal constraints, such as the European General Data Protection Regulation (GDPR). Finally, I will discuss some common-sense guidelines for day-to-day research practice that aim to maximize the societal impact of computational cognitive neuroscience

Integrated research program in space nutrition Semiannual report, 1 Feb. - 31 Jul. 1970

Nutrition and breeding behavior of pocket mouse for space nutrition applicatio

Growth laws and self-similar growth regimes of coarsening two-dimensional foams: Transition from dry to wet limits

We study the topology and geometry of two dimensional coarsening foams with arbitrary liquid fraction. To interpolate between the dry limit described by von Neumann's law, and the wet limit described by Marqusee equation, the relevant bubble characteristics are the Plateau border radius and a new variable, the effective number of sides. We propose an equation for the individual bubble growth rate as the weighted sum of the growth through bubble-bubble interfaces and through bubble-Plateau borders interfaces. The resulting prediction is successfully tested, without adjustable parameter, using extensive bidimensional Potts model simulations. Simulations also show that a selfsimilar growth regime is observed at any liquid fraction and determine how the average size growth exponent, side number distribution and relative size distribution interpolate between the extreme limits. Applications include concentrated emulsions, grains in polycrystals and other domains with coarsening driven by curvature

The stability of a crystal with diamond structure for patchy particles with tetrahedral symmetry

The phase diagram of model anisotropic particles with four attractive patches in a tetrahedral arrangement has been computed at two different values for the range of the potential, with the aim of investigating the conditions under which a diamond crystal can be formed. We find that the diamond phase is never stable for our longer-ranged potential. At low temperatures and pressures, the fluid freezes into a body-centred-cubic solid that can be viewed as two interpenetrating diamond lattices with a weak interaction between the two sublattices. Upon compression, an orientationally ordered face-centred-cubic crystal becomes more stable than the body-centred-cubic crystal, and at higher temperatures a plastic face-centered-cubic phase is stabilized by the increased entropy due to orientational disorder. A similar phase diagram is found for the shorter-ranged potential, but at low temperatures and pressures, we also find a region over which the diamond phase is thermodynamically favored over the body-centred-cubic phase. The higher vibrational entropy of the diamond structure with respect to the body-centred-cubic solid explains why it is stable even though the enthalpy of the latter phase is lower. Some preliminary studies on the growth of the diamond structure starting from a crystal seed were performed. Even though the diamond phase is never thermodynamically stable for the longer-ranged model, direct coexistence simulations of the interface between the fluid and the body-centred-cubic crystal and between the fluid and the diamond crystal show that, at sufficiently low pressures, it is quite probable that in both cases the solid grows into a diamond crystal, albeit involving some defects. These results highlight the importance of kinetic effects in the formation of diamond crystals in systems of patchy particles.Comment: 15 pages, 13 figure

Nonlinear evolution of surface morphology in InAs/AlAs superlattices via surface diffusion

Continuum simulations of self-organized lateral compositional modulation growth in InAs/AlAs short-period superlattices on InP substrate are presented. Results of the simulations correspond quantitatively to the results of synchrotron x-ray diffraction experiments. The time evolution of the compositional modulation during epitaxial growth can be explained only including a nonlinear dependence of the elastic energy of the growing epitaxial layer on its thickness. From the fit of the experimental data to the growth simulations we have determined the parameters of this nonlinear dependence. It was found that the modulation amplitude don't depend on the values of the surface diffusion constants of particular elements.Comment: 4 pages, 3 figures, published in Phys. Rev. Lett. http://link.aps.org/abstract/PRL/v96/e13610

On the action potential as a propagating density pulse and the role of anesthetics

The Hodgkin-Huxley model of nerve pulse propagation relies on ion currents through specific resistors called ion channels. We discuss a number of classical thermodynamic findings on nerves that are not contained in this classical theory. Particularly striking is the finding of reversible heat changes, thickness and phase changes of the membrane during the action potential. Data on various nerves rather suggest that a reversible density pulse accompanies the action potential of nerves. Here, we attempted to explain these phenomena by propagating solitons that depend on the presence of cooperative phase transitions in the nerve membrane. These transitions are, however, strongly influenced by the presence of anesthetics. Therefore, the thermodynamic theory of nerve pulses suggests a explanation for the famous Meyer-Overton rule that states that the critical anesthetic dose is linearly related to the solubility of the drug in the membranes.Comment: 13 pages, 8 figure

A nonlinear theory of non-stationary low Mach number channel flows of freely cooling nearly elastic granular gases

We use hydrodynamics to investigate non-stationary channel flows of freely cooling dilute granular gases. We focus on the regime where the sound travel time through the channel is much shorter than the characteristic cooling time of the gas. As a result, the gas pressure rapidly becomes almost homogeneous, while the typical Mach number of the flow drops well below unity. Eliminating the acoustic modes, we reduce the hydrodynamic equations to a single nonlinear and nonlocal equation of a reaction-diffusion type in Lagrangian coordinates. This equation describes a broad class of channel flows and, in particular, can follow the development of the clustering instability from a weakly perturbed homogeneous cooling state to strongly nonlinear states. If the heat diffusion is neglected, the reduced equation is exactly soluble, and the solution develops a finite-time density blowup. The heat diffusion, however, becomes important near the attempted singularity. It arrests the density blowup and brings about novel inhomogeneous cooling states (ICSs) of the gas, where the pressure continues to decay with time, while the density profile becomes time-independent. Both the density profile of an ICS, and the characteristic relaxation time towards it are determined by a single dimensionless parameter that describes the relative role of the inelastic energy loss and heat diffusion. At large values of this parameter, the intermediate cooling dynamics proceeds as a competition between low-density regions of the gas. This competition resembles Ostwald ripening: only one hole survives at the end.Comment: 20 pages, 15 figures, final versio